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Home : Faculty : Recent Publications
Rustom Antia
- Antia, R., Ganusov, V.V, & Ahmed, R. 2005 "The role of models in understanding CD8+ T cell memory." Nature Reviews Immunology. 5:
- Bergstrom, C.T. & Antia, R. 2006. "How do adaptive immune systems control pathogens while avoiding autoimmunity?" Trends in Ecology and Evolution 21:22-28.
- Antia, R., Regoes, R.R., Koella, J.C., & Bergstrom, C.T. 2003. "The role of evolution in the emergence of infectious diseases." Nature 26:658-661.
- Handel, A., Regoes, R.R., & Antia, R. 2006. "Modeling compensatory mutations and the emergence of drug resistance." PloS Computational Biology. 2:e137.
George Armelagos
Chris Beck
Beck, C. W., and R.E. Beck. 2005. "The effect of packing constraints on optimal investment in offspring." Evolutionary Ecology Research 7:1077-1088.
Greg Dasch
John Glasser
- "Timely identification of control strategies for emerging infectious diseases: severe acute respiratory syndrome in Singapore." (submitted to TPB)
- "Evaluating public health responses to re-introduced smallpox via dynamic, socially structured, and spatially distributed meta-population models." (with JM Lane et al.) Clin Infect Dis (supplement).
- "Clinical and public health applications of mathematical models. Lecture Note Series, Institute for Mathematical Sciences, National University of Singapore." (invited chapter)
- 2001. "The risk of seizures after receipt of whole-cell pertussis or measles, mumps, and rubella vaccines." (with WE Barlow, et al.). N Engl J Med 345(9):656-61.
- 2005. "Reducing the global burden of congenital rubella syndrome: report of the WHO Steering Committee on Research Related to Measles and Rubella Vaccines and Vaccination," June, 2004, Geneva, Switzerland (with AM Arvin, et al.). J Infect Dis 192:1890-97.
William Hawley
Keith Klugman
Bruce Levin
John Lucchesi
- Smith E.R., R. Huang, C. Cayrou, W. S. Lane, J. Cote, and J. C. Lucchesi 2005 "A human complex related to the Drosophila MSL complex is responsible for the majority of histone H4 acetylation at lysine 16." Molec. Cell Biol., 25: 9175-9188.
- Lucchesi, J.C., Kelly, W.G., and B. Panning 2005 "Chromatin remodeling in dosage compensation." Annu. Rev. Genet., 39: 615-651.
- Yokoyama, R., Pannuti, A., Ling, H., Smith, E.R., and J.C. Lucchesi 2007 "A plasmid model system shows that Drosophila dosage compensation depends on the global acetylation of histone H4 at lysine 16 and is not affected by depletion of common transcription elongation chromatin marks." Mol. Cell. Biol. 27: 7865-7870.
David Lynn
- Gao, R.; Lynn, D.G. 2007 "Integration of Rotation and Piston Motions in Coiled-Coil Signal Transduction." /J Bacteriol./ 189: 6048-6056.
- Dong, J; Canfield, JM; Mehta, AK; Stokes, JE; Tian, B; Childers, WS; Simmons, JA; Mao, Z; Scott, RA; Warncke, K; Lynn, DG. 2007 "Engineering metal ion coordination to regulate amyloid fibril assembly and toxicity." /Proc Natl. Acad. Sci. USA/, 104: 13313-13318.
- Keyes, WJ; Palmer, AG; Erbil, WK; Taylor, JV; Apkarian, RP; Weeks, ER; Lynn, DG 2007 "Semagenesis and the Parasitic Angiosperm /Striga asiatica/", /Plant J/., 51: 707-716.
- Hud, N.; Li, X.; Lynn, D.G. 2007 "Addressing the Problems of Base Pairing and Strand Cyclization in Template-Directed Synthesis. A Case for the Utility and Necessity of Molecular Midwives and Reversible Backbone Linkages for the Origin of proto-RNA." /Biodiversity/ 4: 768-83.
John E. McGowan
James Mills
Leslie Real
- Real, L.A., C. A. Russell, L. Waller, D. Smith and J. E. Childs. 2005. "Spatial dynamics and molecular ecology of North American rabies." Journal of Heredity 96: 1-8.
- Russell, C. A., D.L. Smith, J.E. Childs, and L.A. Real. 2005. "Predictive spatial dynamics and strategic planning for raccoon rabies emergence in Ohio." PLoS 3: 382-389.
- Real, L.A., J.E. Childs. 2006. "Spatial-temporal dynamics of rabies in ecological communities." pp. 168-185. In S.K. Collinge and C. Ray (eds.) Disease Ecology: Community structure and pathogen dynamics. Oxford, University Press.
- Walsh, P. D., R. Biek, and L. A. Real. 2005. "Wave-like spread of Ebola Zaire." PloS Biology 3: 1-8.
- Real, L. A., J. C. Henderson, R. Biek, J. Snaman, T. Lambert-Jack, J. E. Childs, E. Stahl. L. Waller, R. Tinline, and S. Nadin-Davis. 2005. "Unifying the spatial population dynamics and molecular evolution of epidemic rabies virus." Proceedings of the National Academy of Sciences 102: 12107-12111.
Charles Rupprecht
- Franka R, Constantine DG, Kuzmin I, Velasco-Villa A, Reeder SA, Streicker D, Orciari LA, Wong AJ, Blanton JD, Rupprecht CE. "A new phylogenetic lineage of rabies virus associated with western pipistrelle bats (Pipistrellus hesperus)." J Gen Virol. 2006 ;87(Pt 8):2309-21.
- Leslie MJ, Messenger S, Rohde RE, Smith J, Cheshier R, Hanlon C, Rupprecht CE. "Bat-associated rabies virus in skunks." Emerg Infect Dis. 2006;12:1274-7.
Todd Schlenke
Stephanie Sherman
- Sherman SL, Freeman SB, Allen EG, Lamb NE. "Risk factors for nondisjunction of trisomy 21." Cytogenet Genome Res 111:273-280, 2005.
- Lamb NE, Sherman SL, Hassold TJ. "Effect of meiotic recombination on the production of aneuploid gametes in humans." Cytogenet Genome Res 111:250-255, 2005.
- Kerstann KF, Feingold E, Freeman SB, Bean LJH, Pyatt R, Tinker S, Meltzer M, Jewel AH, Capone G, Sherman SL: "Linkage disequilibrium mapping in trisomic populations: analytical approaches and an application to congenital heart defects in Down syndrome." Genet Epid 27:240-251, 2004.
- Sullivan AK, Crawford-Hall DC, Scott EH, Leslie MS, Sherman SL. "Paternally-transmitted FMR1 alleles are less stable than maternally-transmitted alleles in the common and intermediate size range." American Journal of Human Genetics, 70:1532-1544, 2002.
- Crawford DC, Zhang F, Wilson B, Warren ST, Sherman SL: "Fragile X CGG repeat structures among African-Americans: identification of a novel factor responsible for repeat instability." Hum Molec Genet 9:1759-1769, 2000.
David Stephens
- Kahler CM, Blum E, Miller YK, Ryan D, Popovic T, Stephens DS. "exl, an exchangeable genetic island in Neisseria meningitidis." Infect Immun 2001; 69:1687-96.
- Dolan-Livengood JM, Miller YK, Kahler CM, Reeves M, Ajello G, and Stephens DS. "Genetic basis for nongroupable Neisseria meningitidis." J Infect Dis 2003; 187:1616-28.
- Gay K, Stephens DS. "Structure and dissemination of a chromosomal insertion element encoding macrolide efflux in Streptococcus pneumoniae." J Infect Dis 2001; 184:56-65.
- Stephens DS, Zughaier SM, Whitney CG, Baughman WS, Barker L, Gay K, Jackson D, Orenstein WA, Arnold K, Schuchat A, Farley MM, and the Georgia Emerging Infections Program. "Incidence of macrolide resistance in Streptococcus pneumoniae after introduction of the pneumococcal conjugate vaccine: population-based assessment." Lancet 2005; 365:855-63.
Yun Tao
- Tao, Y., D. L. Hartl & C. C. Laurie. 2001. "Sex-ratio segregation distortion associated with reproductive isolation in Drosophila." Proc. Natl. Acad. Sci. USA 98: 13183-13188.
- Tao, Y., S. Chen, D. L. Hartl & C. C. Laurie. 2003. "Genetic dissection of hybrid incompatibilities between Drosophila simulans and Drosophila mauritiana. I. Differential accumulation of hybrid male sterility effects on the X and autosomes." Genetics 164: 1383 – 1397.
- Tao Y, Masly JP, Araripe L, Ke Y, Hartl DL (2007) "A sex-ratio meiotic drive system in Drosophila simulans. I: An autosomal suppressor." PLoS Biol 5(11): e292.
- Tao Y, Araripe L, Kingan SB, Ke Y, Xiao H, et al. (2007) "A sex-ratio meiotic drive system in Drosophila simulans. II: An X-linked distorter." PLoS Biol 5(11): e293.
Robert Tauxe
Fred Tenover
- Tenover FC: "Mechanisms of antimicrobial resistance in bacteria." Am J Med.119 (6 Suppl 1):S3-10, 2006.
- Tenover FC, McDougal LK, Goering RV, Killgore G, Projan S, Patel JB, Dunman PM: "Characterization of a widely disseminated strain of community-associated methicillin-resistant Staphylococcus aureus from the United States." J Clin Microbiol 44:108-118, 2006.
- McDougal LK, Steward CD, Killgore GE, Chaitram JM, McAllister SK, Tenover FC: "Pulsed-field gel electrophoresis typing of oxacillin-resistant Staphylococcus aureus isolates from the United States: establishing a national database." J Clin Microbiol 41:5113-5120, 2003.
James Thomas
- Keebaugh, A.C., Sullivan, R.T., NISC Comparative Sequencing Program, Thomas, J.W. "Gene duplication and inactivation in the HPRT-gene family," Genomics, in press.
- Thomas, J.W., et al, and Green, E.D. "Comparative analyses of multi-species sequences from targeted genomic regions." Nature, 424:788-793, 2003.
- Cáceres, M., NISC Comparative Sequencing Program, Sullivan, R.T., Thomas, J.W. "A recurrent inversion on the eutherian X chromosome." Proc. Natl. Acad. Sci. USA, 104:18571-18576, 2007.
V. Udhayakumar
- McCollum AM, Poe A, Hamel M, Huber C, Zhou Z, Shi YP, Ouma P, Vulule J, Bloland P, Slutsker L, Barnwell JW, Udhayakumar V, Escalante AA. 2006. "Antifolate resistance in Plasmodium falciparum: multiple origins and identification of novel dhfr alleles." J. Infect. Dis. 194: 189-97.
- McCollum AM, Mueller K, Villegas L, Udhayakumar V, Escalante A. 2007. "Common origin and fixation of Plasmodium falciparum dhfr and dhps mutations associated with sulphadoxine-pyrimethamine resistance in a low transmission area in South America." Antimicrobial Agents and Chemotherapy 51 (6): 2085-2091.
- Keen J, Serghides L, Ayi K, Patel SN, Ayisi J, van Eijk A, Steketee R, Udhayakumar V, and Kain KC. 2007. "HIV Impairs Opsonic Phagocytic Clearance of Pregnancy-Associated Malaria Parasites." PLOS Medicine, 4(5): e181.
- Ned R, Moore JM, Chaisavaneeyakorn S, and Udhayakumar V. 2005. "Modulation of immune responses during HIV-malaria coinfection in pregnancy." Trends Parasitol. 21(6):284-91.
- Aidoo M, Terlouw DJ, Kolczak MS, McElroy PD, ter Kuile F, Kariuki S, Nahlen BL, Lal A, and Udhayakumar V. 2002. "Protective effects of the sickle cell trait gene against malaria morbidity and mortality." Lancet 359: 1311-1312
Irwin Waldman
- Waldman, I.D., Nigg, J.T., Gizer, I.R., Park, L., Rappley, M., and Friderici, K. (2006). "The Adrenergic Receptor 2-a Gene (ADRA2a) and Neuropsychological Executive Functions as Putative Endophenotypes for Childhood ADHD." Cognitive, Affective, and Behavioral Neuroscience, 6, 18
- Waldman, I.D. (2005). "Statistical Approaches to Complex Phenotypes: Evaluating Neuropsychological Endophenotypes for ADHD." Biological Psychiatry, 57, 1347-1356.
- Park, L., Nigg, J.T., Waldman, I.D., Nummy, K.A., Huang-Pollock, C., Rappley, M. Friderici, K.H. (2005). "Association and Linkage of a-2A Adrenergic Receptor Gene Polymorphisms with Childhood ADHD." Molecular Psychiatry, 10, 572-580.
- Waldman, I.D., Rowe, D.C., Abramowitz, A., Kozel, S.T., Mohr, J.H., Sherman, S.L., Cleveland, H.H., Sanders, M.L., & Stever, C. (1998). "Association and linkage of the dopamine transporter gene (DAT1) and Attention Deficit Hyperactivity Disorder in children." American Journal of Human Genetics, 63, 1767-1776.
Lance Waller
- Waller, L.A., Smith, D., Real, L.A., and Childs, J. (2003) "Monte Carlo assessments of goodness of fit for ecological simulation models".
- Smith, D., Lucey, B.,Waller, L.A., Childs, J.E., and Real, L.A. (2002) "Predicting the spatial dynamics of rabies epidemics on heterogeneous landscapes". Proceedings of the National Academy of Sciences, USA. 99, 3668-3672.
Carol Worthman
- T.M. McDade and C.M. Worthman, 1999. "Evolutionary process and the ecology of human immune function." American Journal of Human Biology 11: 705-717.
- C.M. Worthman and J. Kuzara, 2005. "Life history and the early origins of health differentials." American Journal of Human Biology 17:95-112.
Michael Zwick
- Zwick, M.E., D.J. Cutler, and C.H. Langley, Classic Weinstein: tetrad analysis, genetic variation and achiasmate segregation in Drosophila and humans. Genetics, 1999. 152(4): p. 1615-29.
- Zwick, M.E., J.L. Salstrom, and C.H. Langley, Genetic variation in rates of nondisjunction: association of two naturally occurring polymorphisms in the chromokinesin nod with increased rates of nondisjunction in Drosophila melanogaster. Genetics, 1999. 152(4): p. 1605-14.
- Zwick, M.E., D.J. Cutler, and A. Chakravarti, Patterns of genetic variation in Mendelian and complex traits. Annu Rev Genomics Hum Genet, 2000. 1: p. 387-407.
- Cutler, D. J., M. E. Zwick, M. M. Carrasquillo, C. T. Yohn, K. P. Tobin, C. Kashuk, D. J. Mathews, N. A. Shah, E. E. Eichler, J. A. Warrington, A. Chakravarti. 2001. "High-throughput variation detection and genotyping using microarrays." Genome Research 11(11): 1913-25.
- Zwick, M. E., F. Mcafee, D. J. Cutler, T. D. Read, J. Ravel, G. R. Bowman, D. R. Galloway, A. Mateczun. 2004. "Microarray based resequencing of multiple B. anthracis isolates." Genome Biology 6(1): R10. Epub 2004 Dec 17.
- Zwick, M. E. 2005. "A genome sequencing center in every lab." European Journal of Human Genetics 13: 1167-1168.
- Okou, D.T., K.M. Steinberg, C. Middle, D.J. Cutler, T.J. Albert, and M.E. Zwick, Microarray-based genomic selection for high-throughput resequencing. Nat Methods, 2007. 4(11): p. 907-9.
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Okou, D.T. and M.E. Zwick, The Role of Resequencing Arrays in Revolutionizing DNA Sequencing, in Genome Sequencing Technology and Algorithms, S. Kim, H. Tang, and E.R. Mardis, Editors. 2008, Artech House, Inc.: Boston. p. 25-42.
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